Loop J4_7NWG

3D structure

PDB id: 7NWG (explore in PDB, NAKB, or RNA 3D Hub)
Description: Mammalian pre-termination 80S ribosome with Hybrid P/E- and A/P-site tRNA's bound by Blasticidin S.
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.8 Å

Loop

Sequence: GGAGAUG*CAGUG*CGACCGAUCCC*GGGGGAGAGGGUGUAAAUCUC
Length: 44 nucleotides
Bulged bases: 7NWG|1|51|G|2574, 7NWG|1|51|C|2594, 7NWG|1|51|U|2763, 7NWG|1|51|U|2769
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

7NWG|1|51|G|2549
7NWG|1|51|G|2550
7NWG|1|51|A|2551
7NWG|1|51|G|2552
7NWG|1|51|A|2553
7NWG|1|51|U|2554
7NWG|1|51|G|2555
*
7NWG|1|51|C|2572
7NWG|1|51|A|2573
7NWG|1|51|G|2574
7NWG|1|51|U|2575
7NWG|1|51|G|2576
*
7NWG|1|51|C|2585
7NWG|1|51|G|2586
7NWG|1|51|A|2587
7NWG|1|51|C|2588
7NWG|1|51|C|2589
7NWG|1|51|G|2590
7NWG|1|51|A|2591
7NWG|1|51|U|2592
7NWG|1|51|C|2593
7NWG|1|51|C|2594
7NWG|1|51|C|2595
*
7NWG|1|51|G|2750
7NWG|1|51|G|2751
7NWG|1|51|G|2752
7NWG|1|51|G|2753
7NWG|1|51|G|2754
7NWG|1|51|A|2755
7NWG|1|51|G|2756
7NWG|1|51|A|2757
7NWG|1|51|G|2758
7NWG|1|51|G|2759
7NWG|1|51|G|2760
7NWG|1|51|U|2761
7NWG|1|51|G|2762
7NWG|1|51|U|2763
7NWG|1|51|A|2764
7NWG|1|51|A|2765
7NWG|1|51|A|2766
7NWG|1|51|U|2767
7NWG|1|51|C|2768
7NWG|1|51|U|2769
7NWG|1|51|C|2770

Current chains

Chain 51: 28S Ribosomal RNA

Nearby chains

Chain A3: L8
Chain Z3: 60S ribosomal protein L27
Chain g3: 60S ribosomal protein L34

J4_7NWG_015