J4_7NWG_018

3D structure

PDB id

7NWG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian pre-termination 80S ribosome with Hybrid P/E- and A/P-site tRNA's bound by Blasticidin S.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CUGCCCAGUGCU*GGUAAACGGCGGGA*UCUCUUAAGGUAGCCAAAUGCCUCG*CGCGCAUGAAUG

Length

63 nucleotides

Bulged bases

7NWG|1|51|A|3785, 7NWG|1|51|C|3791, 7NWG|1|51|C|3810, 7NWG|1|51|U|3818

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7NWG|1|51|C|3696
7NWG|1|51|U|3697
7NWG|1|51|G|3698
7NWG|1|51|C|3699
7NWG|1|51|C|3700
7NWG|1|51|C|3701
7NWG|1|51|A|3702
7NWG|1|51|G|3703
7NWG|1|51|U|3704
7NWG|1|51|G|3705
7NWG|1|51|C|3706
7NWG|1|51|U|3707
*
7NWG|1|51|G|3743
7NWG|1|51|G|3744
7NWG|1|51|U|3745
7NWG|1|51|A|3746
7NWG|1|51|A|3747
7NWG|1|51|A|3748
7NWG|1|51|C|3749
7NWG|1|51|G|3750
7NWG|1|51|G|3751
7NWG|1|51|C|3752
7NWG|1|51|G|3753
7NWG|1|51|G|3754
7NWG|1|51|G|3755
7NWG|1|51|A|3756
*
7NWG|1|51|U|3768
7NWG|1|51|C|3769
7NWG|1|51|U|3770
7NWG|1|51|C|3771
7NWG|1|51|U|3772
7NWG|1|51|U|3773
7NWG|1|51|A|3774
7NWG|1|51|A|3775
7NWG|1|51|G|3776
7NWG|1|51|G|3777
7NWG|1|51|U|3778
7NWG|1|51|A|3779
7NWG|1|51|G|3780
7NWG|1|51|C|3781
7NWG|1|51|C|3782
7NWG|1|51|A|3783
7NWG|1|51|A|3784
7NWG|1|51|A|3785
7NWG|1|51|U|3786
7NWG|1|51|G|3787
7NWG|1|51|C|3788
7NWG|1|51|C|3789
7NWG|1|51|U|3790
7NWG|1|51|C|3791
7NWG|1|51|G|3792
*
7NWG|1|51|C|3808
7NWG|1|51|G|3809
7NWG|1|51|C|3810
7NWG|1|51|G|3811
7NWG|1|51|C|3812
7NWG|1|51|A|3813
7NWG|1|51|U|3814
7NWG|1|51|G|3815
7NWG|1|51|A|3816
7NWG|1|51|A|3817
7NWG|1|51|U|3818
7NWG|1|51|G|3819

Current chains

Chain 51

28S Ribosomal RNA

Nearby chains

Chain 33

Transfer RNA; tRNA

Chain A2

Small subunit ribosomal RNA; SSU rRNA

Chain A3

L8

Chain n3

60s ribosomal protein l41

Chain q3

Transfer RNA; tRNA