J4_7NWG_020

3D structure

PDB id

7NWG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian pre-termination 80S ribosome with Hybrid P/E- and A/P-site tRNA's bound by Blasticidin S.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CUAAGGCG*CGCUUG*CC*GGG

Length

19 nucleotides

Bulged bases

7NWG|1|51|A|4234, 7NWG|1|51|G|4329

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7NWG|1|51|C|4231
7NWG|1|51|U|4232
7NWG|1|51|A|4233
7NWG|1|51|A|4234
7NWG|1|51|G|4235
7NWG|1|51|G|4236
7NWG|1|51|C|4237
7NWG|1|51|G|4238
*
7NWG|1|51|C|4286
7NWG|1|51|G|4287
7NWG|1|51|C|4288
7NWG|1|51|U|4289
7NWG|1|51|U|4290
7NWG|1|51|G|4291
*
7NWG|1|51|C|4318
7NWG|1|51|C|4319
*
7NWG|1|51|G|4328
7NWG|1|51|G|4329
7NWG|1|51|G|4330

Current chains

Chain 51

28S Ribosomal RNA

Nearby chains

Chain D3

60S ribosomal protein L5

Chain J3

60S ribosomal protein L11

Chain T3

eL21

Chain o3

eL42