J4_7NWG_021
3D structure
- PDB id
- 7NWG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian pre-termination 80S ribosome with Hybrid P/E- and A/P-site tRNA's bound by Blasticidin S.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- GUAG*CGUU*AAAGGUCC*GC
- Length
- 18 nucleotides
- Bulged bases
- 7NWG|1|q3|U|8, 7NWG|1|q3|U|47, 7NWG|1|q3|C|48
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_7NWG_021 not in the Motif Atlas
- Homologous match to J4_5WWT_001
- Geometric discrepancy: 0.3771
- The information below is about J4_5WWT_001
- Detailed Annotation
- tRNA junction
- Broad Annotation
- No text annotation
- Motif group
- J4_65285.1
- Basepair signature
- cWW-F-F-F-F-F-cWW-cWW-F-cWW-F
- Number of instances in this motif group
- 2
Unit IDs
7NWG|1|q3|G|7
7NWG|1|q3|U|8
7NWG|1|q3|A|9
7NWG|1|q3|G|10
*
7NWG|1|q3|C|25
7NWG|1|q3|G|26
7NWG|1|q3|U|27
7NWG|1|q3|U|28
*
7NWG|1|q3|A|42
7NWG|1|q3|A|43
7NWG|1|q3|A|44
7NWG|1|q3|G|45
7NWG|1|q3|G|46
7NWG|1|q3|U|47
7NWG|1|q3|C|48
7NWG|1|q3|C|49
*
7NWG|1|q3|G|65
7NWG|1|q3|C|66
Current chains
- Chain q3
- A/P-Site tRNA
Nearby chains
- Chain 51
- Large subunit ribosomal RNA; LSU rRNA
- Chain A2
- Small subunit ribosomal RNA; SSU rRNA
- Chain I3
- 60S ribosomal protein L10
- Chain Q2
- 40S ribosomal protein uS19
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