J4_7NWH_003

3D structure

PDB id

7NWH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian pre-termination 80S ribosome with eRF1 and eRF3 bound by Blasticidin S.

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

CAAAUAU*AGG*CAUGUU*AG

Length

18 nucleotides

Bulged bases

7NWH|1|5|A|2366, 7NWH|1|5|U|2369, 7NWH|1|5|U|2828

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7NWH|1|5|C|2365
7NWH|1|5|A|2366
7NWH|1|5|A|2367
7NWH|1|5|A|2368
7NWH|1|5|U|2369
7NWH|1|5|A|2370
7NWH|1|5|U|2371
*
7NWH|1|5|A|2389
7NWH|1|5|G|2390
7NWH|1|5|G|2391
*
7NWH|1|5|C|2824
7NWH|1|5|A|2825
7NWH|1|5|U|2826
7NWH|1|5|G|2827
7NWH|1|5|U|2828
7NWH|1|5|U|2829
*
7NWH|1|5|A|3856
7NWH|1|5|G|3857

Current chains

Chain 5

28S Ribosomal RNA

Nearby chains

Chain P

uL22

Chain R

60S ribosomal protein L19

Chain d

eL31