J4_7NWH_004
3D structure
- PDB id
- 7NWH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian pre-termination 80S ribosome with eRF1 and eRF3 bound by Blasticidin S.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.1 Å
Loop
- Sequence
- GGUUC*GGUCAG*UC*GGCCGUAC
- Length
- 21 nucleotides
- Bulged bases
- 7NWH|1|5|G|2407, 7NWH|1|5|C|2437, 7NWH|1|5|A|2438
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_7NWH_004 not in the Motif Atlas
- Homologous match to J4_8C3A_004
- Geometric discrepancy: 0.163
- The information below is about J4_8C3A_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
7NWH|1|5|G|2406
7NWH|1|5|G|2407
7NWH|1|5|U|2408
7NWH|1|5|U|2409
7NWH|1|5|C|2410
*
7NWH|1|5|G|2434
7NWH|1|5|G|2435
7NWH|1|5|U|2436
7NWH|1|5|C|2437
7NWH|1|5|A|2438
7NWH|1|5|G|2439
*
7NWH|1|5|U|2538
7NWH|1|5|C|2539
*
7NWH|1|5|G|2777
7NWH|1|5|G|2778
7NWH|1|5|C|2779
7NWH|1|5|C|2780
7NWH|1|5|G|2781
7NWH|1|5|U|2782
7NWH|1|5|A|2783
7NWH|1|5|C|2784
Current chains
- Chain 5
- 28S Ribosomal RNA
Nearby chains
- Chain 8
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain R
- 60S ribosomal protein L19
- Chain X
- uL23
- Chain g
- 60S ribosomal protein L34
- Chain j
- Ribosomal protein L37
- Chain k
- L38
- Chain l
- eL39
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