J4_7NWH_006
3D structure
- PDB id
- 7NWH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian pre-termination 80S ribosome with eRF1 and eRF3 bound by Blasticidin S.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.1 Å
Loop
- Sequence
- GACUG*CAAAG*UGAUU*AUGAAC
- Length
- 21 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_7NWH_006 not in the Motif Atlas
- Homologous match to J4_8P9A_017
- Geometric discrepancy: 0.1588
- The information below is about J4_8P9A_017
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_07509.2
- Basepair signature
- cWW-tSW-F-F-tHS-F-cWW-F-cWW-F-F-tHS-F-cWW
- Number of instances in this motif group
- 3
Unit IDs
7NWH|1|5|G|3634
7NWH|1|5|A|3635
7NWH|1|5|C|3636
7NWH|1|5|U|3637
7NWH|1|5|G|3638
*
7NWH|1|5|C|3650
7NWH|1|5|A|3651
7NWH|1|5|A|3652
7NWH|1|5|A|3653
7NWH|1|5|G|3654
*
7NWH|1|5|U|3690
7NWH|1|5|G|3691
7NWH|1|5|A|3692
7NWH|1|5|U|3693
7NWH|1|5|U|3694
*
7NWH|1|5|A|3821
7NWH|1|5|U|3822
7NWH|1|5|G|3823
7NWH|1|5|A|3824
7NWH|1|5|A|3825
7NWH|1|5|C|3826
Current chains
- Chain 5
- 28S Ribosomal RNA
Nearby chains
- Chain 9
- Small subunit ribosomal RNA; SSU rRNA
- Chain A
- 60S ribosomal protein L8
- Chain n
- 60s ribosomal protein l41
- Chain p
- ribosomal protein eL43
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