J4_7NWI_001

3D structure

PDB id

7NWI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian pre-termination 80S ribosome with Empty-A site bound by Blasticidin S

Experimental method

ELECTRON MICROSCOPY

Resolution

3.13 Å

Loop

Sequence

GUAG*CGU*AAGGUCC*GC

Length

16 nucleotides

Bulged bases

7NWI|1|2|U|8, 7NWI|1|2|U|47, 7NWI|1|2|C|48

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7NWI_001 not in the Motif Atlas

Homologous match to J4_4WT8_034

Geometric discrepancy: 0.2216

The information below is about J4_4WT8_034

Detailed Annotation

tRNA junction

Broad Annotation

No text annotation

Motif group

J4_70449.29

Basepair signature

cWW-F-cWW-cWW-cHS-F-cWW-cWW

Number of instances in this motif group

54

Unit IDs

7NWI|1|2|G|7
7NWI|1|2|U|8
7NWI|1|2|A|9
7NWI|1|2|G|10
*
7NWI|1|2|C|25
7NWI|1|2|G|26
7NWI|1|2|U|27
*
7NWI|1|2|A|43
7NWI|1|2|A|44
7NWI|1|2|G|45
7NWI|1|2|G|46
7NWI|1|2|U|47
7NWI|1|2|C|48
7NWI|1|2|C|49
*
7NWI|1|2|G|65
7NWI|1|2|C|66

Current chains

Chain 2

P-Site tRNA

Nearby chains

Chain 5

Large subunit ribosomal RNA; LSU rRNA

Chain I

60S ribosomal protein L10