J4_7NWI_005

3D structure

PDB id

7NWI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian pre-termination 80S ribosome with Empty-A site bound by Blasticidin S

Experimental method

ELECTRON MICROSCOPY

Resolution

3.13 Å

Loop

Sequence

CAAAUAU*AGG*CAUGUU*AG

Length

18 nucleotides

Bulged bases

7NWI|1|5|A|2366, 7NWI|1|5|U|2369, 7NWI|1|5|U|2828

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7NWI|1|5|C|2365
7NWI|1|5|A|2366
7NWI|1|5|A|2367
7NWI|1|5|A|2368
7NWI|1|5|U|2369
7NWI|1|5|A|2370
7NWI|1|5|U|2371
*
7NWI|1|5|A|2389
7NWI|1|5|G|2390
7NWI|1|5|G|2391
*
7NWI|1|5|C|2824
7NWI|1|5|A|2825
7NWI|1|5|U|2826
7NWI|1|5|G|2827
7NWI|1|5|U|2828
7NWI|1|5|U|2829
*
7NWI|1|5|A|3856
7NWI|1|5|G|3857

Current chains

Chain 5

28S ribosomal RNA+BlaS

Nearby chains

Chain P

L17

Chain R

60S ribosomal protein L19

Chain d

eL31