J4_7NWI_012

3D structure

PDB id

7NWI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian pre-termination 80S ribosome with Empty-A site bound by Blasticidin S

Experimental method

ELECTRON MICROSCOPY

Resolution

3.13 Å

Loop

Sequence

GUAA*UC*GUG*CGCC

Length

13 nucleotides

Bulged bases

7NWI|1|5|U|4677

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7NWI|1|5|G|4587
7NWI|1|5|U|4588
7NWI|1|5|A|4589
7NWI|1|5|A|4590
*
7NWI|1|5|U|4620
7NWI|1|5|C|4621
*
7NWI|1|5|G|4676
7NWI|1|5|U|4677
7NWI|1|5|G|4678
*
7NWI|1|5|C|4712
7NWI|1|5|G|4713
7NWI|1|5|C|4714
7NWI|1|5|C|4715

Current chains

Chain 5

28S ribosomal RNA+BlaS

Nearby chains

Chain B

uL3

Chain O

L13a

Chain V

eL14