J4_7NWI_014
3D structure
- PDB id
- 7NWI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian pre-termination 80S ribosome with Empty-A site bound by Blasticidin S
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.13 Å
Loop
- Sequence
- AAG*CGAAAG*CCAUAAACGAUG*UU
- Length
- 23 nucleotides
- Bulged bases
- 7NWI|1|9|A|672, 7NWI|1|9|A|1083
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_7NWI_014 not in the Motif Atlas
- Homologous match to J4_8P9A_022
- Geometric discrepancy: 0.1202
- The information below is about J4_8P9A_022
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_61885.6
- Basepair signature
- cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F
- Number of instances in this motif group
- 4
Unit IDs
7NWI|1|9|A|671
7NWI|1|9|A|672
7NWI|1|9|G|673
*
7NWI|1|9|C|1032
7NWI|1|9|G|1033
7NWI|1|9|A|1034
7NWI|1|9|A|1035
7NWI|1|9|A|1036
7NWI|1|9|G|1037
*
7NWI|1|9|C|1078
7NWI|1|9|C|1079
7NWI|1|9|A|1080
7NWI|1|9|U|1081
7NWI|1|9|A|1082
7NWI|1|9|A|1083
7NWI|1|9|A|1084
7NWI|1|9|C|1085
7NWI|1|9|G|1086
7NWI|1|9|A|1087
7NWI|1|9|U|1088
7NWI|1|9|G|1089
*
7NWI|1|9|U|1160
7NWI|1|9|U|1161
Current chains
- Chain 9
- 18S ribosomal RNA
Nearby chains
- Chain LL
- 40S ribosomal protein S11
- Chain NN
- ribosomal protein uS15
- Chain OO
- S14
- Chain WW
- Ribosomal protein S15a
- Chain XX
- Ribosomal protein S23
- Chain aa
- 40S ribosomal protein S26
- Chain n
- 60s ribosomal protein l41
- Chain p
- ribosomal protein eL43
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