J4_7NWT_001

3D structure

PDB id

7NWT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Initiated 70S ribosome in complex with 2A protein from encephalomyocarditis virus (EMCV)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

7NWT|1|1|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7NWT_001 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.0952

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

7NWT|1|1|C|268
7NWT|1|1|C|269
*
7NWT|1|1|G|370
7NWT|1|1|A|371
7NWT|1|1|G|372
7NWT|1|1|U|373
7NWT|1|1|A|374
7NWT|1|1|G|375
*
7NWT|1|1|U|399
7NWT|1|1|G|400
7NWT|1|1|A|401
7NWT|1|1|A|402
7NWT|1|1|U|403
7NWT|1|1|A|404
7NWT|1|1|U|405
7NWT|1|1|G|406
*
7NWT|1|1|C|421
7NWT|1|1|A|422
7NWT|1|1|A|423
7NWT|1|1|G|424

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain G

50S ribosomal protein L9

Chain X

50S ribosomal protein L28