J4_7NWT_013

3D structure

PDB id

7NWT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Initiated 70S ribosome in complex with 2A protein from encephalomyocarditis virus (EMCV)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

GAG*CAUAACG*CCAAAG*UGC

Length

19 nucleotides

Bulged bases

7NWT|1|2|C|183

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7NWT_013 not in the Motif Atlas

Homologous match to J4_5J7L_002

Geometric discrepancy: 0.0932

The information below is about J4_5J7L_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_01665.1

Basepair signature

cWW-tWH-F-tWH-cWW-tSS-F-tHW-tSS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

7NWT|1|2|G|142
7NWT|1|2|A|143
7NWT|1|2|G|144
*
7NWT|1|2|C|178
7NWT|1|2|A|179
7NWT|1|2|U|180
7NWT|1|2|A|181
7NWT|1|2|A|182
7NWT|1|2|C|183
7NWT|1|2|G|184
*
7NWT|1|2|C|193
7NWT|1|2|C|194
7NWT|1|2|A|195
7NWT|1|2|A|196
7NWT|1|2|A|197
7NWT|1|2|G|198
*
7NWT|1|2|U|219
7NWT|1|2|G|220
7NWT|1|2|C|221

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain y

30S ribosomal protein S20