J4_7NWW_001

3D structure

PDB id

7NWW (explore in PDB, NAKB, or RNA 3D Hub)

Description

CspA-27 cotranslational folding intermediate 1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.05 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

7NWW|1|1|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7NWW_001 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.1195

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

7NWW|1|1|C|268
7NWW|1|1|C|269
*
7NWW|1|1|G|370
7NWW|1|1|A|371
7NWW|1|1|G|372
7NWW|1|1|U|373
7NWW|1|1|A|374
7NWW|1|1|G|375
*
7NWW|1|1|U|399
7NWW|1|1|G|400
7NWW|1|1|A|401
7NWW|1|1|A|402
7NWW|1|1|U|403
7NWW|1|1|A|404
7NWW|1|1|U|405
7NWW|1|1|G|406
*
7NWW|1|1|C|421
7NWW|1|1|A|422
7NWW|1|1|A|423
7NWW|1|1|G|424

Current chains

Chain 1

23S rRNA

Nearby chains

Chain H

50S ribosomal protein L9

Chain W

50S ribosomal protein L28