J4_7NWW_012

3D structure

PDB id

7NWW (explore in PDB, NAKB, or RNA 3D Hub)

Description

CspA-27 cotranslational folding intermediate 1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.05 Å

Loop

Sequence

GAGUAAUG*UG*CUAG*CC

Length

16 nucleotides

Bulged bases

7NWW|1|2|U|121

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7NWW_012 not in the Motif Atlas

Homologous match to J4_5J7L_001

Geometric discrepancy: 0.1681

The information below is about J4_5J7L_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_35578.3

Basepair signature

cWW-F-cWW-F-F-F-tHW-F-cWW-cWW

Number of instances in this motif group

2

Unit IDs

7NWW|1|2|G|115
7NWW|1|2|A|116
7NWW|1|2|G|117
7NWW|1|2|U|118
7NWW|1|2|A|119
7NWW|1|2|A|120
7NWW|1|2|U|121
7NWW|1|2|G|122
*
7NWW|1|2|U|239
7NWW|1|2|G|240
*
7NWW|1|2|C|286
7NWW|1|2|U|287
7NWW|1|2|A|288
7NWW|1|2|G|289
*
7NWW|1|2|C|311
7NWW|1|2|C|312

Current chains

Chain 2

16S rRNA

Nearby chains

Chain t

30S ribosomal protein S16

Chain u

30S ribosomal protein S17