3D structure

PDB id
7NWW (explore in PDB, NAKB, or RNA 3D Hub)
Description
CspA-27 cotranslational folding intermediate 1
Experimental method
ELECTRON MICROSCOPY
Resolution
3.05 Å

Loop

Sequence
GAG*CAUAACG*CCAAAG*UGC
Length
19 nucleotides
Bulged bases
7NWW|1|2|C|183, 7NWW|1|2|A|197
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_7NWW_013 not in the Motif Atlas
Homologous match to J4_5J7L_002
Geometric discrepancy: 0.1695
The information below is about J4_5J7L_002
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_01665.1
Basepair signature
cWW-tWH-F-tWH-cWW-tSS-F-tHW-tSS-cWW-cWW
Number of instances in this motif group
1

Unit IDs

7NWW|1|2|G|142
7NWW|1|2|A|143
7NWW|1|2|G|144
*
7NWW|1|2|C|178
7NWW|1|2|A|179
7NWW|1|2|U|180
7NWW|1|2|A|181
7NWW|1|2|A|182
7NWW|1|2|C|183
7NWW|1|2|G|184
*
7NWW|1|2|C|193
7NWW|1|2|C|194
7NWW|1|2|A|195
7NWW|1|2|A|196
7NWW|1|2|A|197
7NWW|1|2|G|198
*
7NWW|1|2|U|219
7NWW|1|2|G|220
7NWW|1|2|C|221

Current chains

Chain 2
16S rRNA

Nearby chains

Chain x
30S ribosomal protein S20

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.4163 s