J4_7O5B_013

3D structure

PDB id

7O5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a Bacillus subtilis MifM-stalled ribosome-nascent chain complex with (p)ppGpp-SRP bound

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

CUG*CG*CCUAAGGUAG*CGAAAG

Length

21 nucleotides

Bulged bases

7O5B|1|X|A|2000

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7O5B_013 not in the Motif Atlas

Homologous match to J4_9DFE_008

Geometric discrepancy: 0.1282

The information below is about J4_9DFE_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_42306.2

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

6

Unit IDs

7O5B|1|X|C|1862
7O5B|1|X|U|1863
7O5B|1|X|G|1864
*
7O5B|1|X|C|1934
7O5B|1|X|G|1935
*
7O5B|1|X|C|1953
7O5B|1|X|C|1954
7O5B|1|X|U|1955
7O5B|1|X|A|1956
7O5B|1|X|A|1957
7O5B|1|X|G|1958
7O5B|1|X|G|1959
7O5B|1|X|U|1960
7O5B|1|X|A|1961
7O5B|1|X|G|1962
*
7O5B|1|X|C|1996
7O5B|1|X|G|1997
7O5B|1|X|A|1998
7O5B|1|X|A|1999
7O5B|1|X|A|2000
7O5B|1|X|G|2001

Current chains

Chain X

23S rRNA (2887-MER)

Nearby chains

Chain A

Small subunit ribosomal RNA; SSU rRNA

Chain U

Transfer RNA; tRNA

Chain Z

50S ribosomal protein L2