J4_7O5B_015

3D structure

PDB id

7O5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a Bacillus subtilis MifM-stalled ribosome-nascent chain complex with (p)ppGpp-SRP bound

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

GAGC*GAC*GGACG*CCC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7O5B_015 not in the Motif Atlas

Homologous match to J4_5J7L_028

Geometric discrepancy: 0.2102

The information below is about J4_5J7L_028

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_77044.4

Basepair signature

cWW-F-tHS-F-cWW-cWW-cWW-F-cWW

Number of instances in this motif group

3

Unit IDs

7O5B|1|X|G|2672
7O5B|1|X|A|2673
7O5B|1|X|G|2674
7O5B|1|X|C|2675
*
7O5B|1|X|G|2703
7O5B|1|X|A|2704
7O5B|1|X|C|2705
*
7O5B|1|X|G|2760
7O5B|1|X|G|2761
7O5B|1|X|A|2762
7O5B|1|X|C|2763
7O5B|1|X|G|2764
*
7O5B|1|X|C|2798
7O5B|1|X|C|2799
7O5B|1|X|C|2800

Current chains

Chain X

23S rRNA (2887-MER)

Nearby chains

Chain a

50S ribosomal protein L3

Chain e

50S ribosomal protein L13

Chain f

50S ribosomal protein L14