J4_7O5H_001

3D structure

PDB id

7O5H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ribosomal methyltransferase KsgA bound to small ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GAGUAAUG*UG*CUAG*CC

Length

16 nucleotides

Bulged bases

7O5H|1|A|U|121

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7O5H_001 not in the Motif Atlas

Homologous match to J4_5J7L_001

Geometric discrepancy: 0.2158

The information below is about J4_5J7L_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_35578.3

Basepair signature

cWW-F-cWW-F-F-F-tHW-F-cWW-cWW

Number of instances in this motif group

2

Unit IDs

7O5H|1|A|G|115
7O5H|1|A|A|116
7O5H|1|A|G|117
7O5H|1|A|U|118
7O5H|1|A|A|119
7O5H|1|A|A|120
7O5H|1|A|U|121
7O5H|1|A|G|122
*
7O5H|1|A|U|239
7O5H|1|A|G|240
*
7O5H|1|A|C|286
7O5H|1|A|U|287
7O5H|1|A|A|288
7O5H|1|A|G|289
*
7O5H|1|A|C|311
7O5H|1|A|C|312

Current chains

Chain A

16S rRNA

Nearby chains

Chain P

30S ribosomal protein S16

Chain Q

30S ribosomal protein S17