J4_7O7Y_002
3D structure
- PDB id
- 7O7Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (high resolution)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- AAG*CGAAAG*CCA(PSU)AAACGAUG*UU
- Length
- 23 nucleotides
- Bulged bases
- 7O7Y|1|A2|A|673, 7O7Y|1|A2|A|1084, 7O7Y|1|A2|C|1086, 7O7Y|1|A2|A|1088
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_7O7Y_002 not in the Motif Atlas
- Homologous match to J4_8P9A_022
- Geometric discrepancy: 0.1118
- The information below is about J4_8P9A_022
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_14595.1
- Basepair signature
- cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F
- Number of instances in this motif group
- 5
Unit IDs
7O7Y|1|A2|A|672
7O7Y|1|A2|A|673
7O7Y|1|A2|G|674
*
7O7Y|1|A2|C|1033
7O7Y|1|A2|G|1034
7O7Y|1|A2|A|1035
7O7Y|1|A2|A|1036
7O7Y|1|A2|A|1037
7O7Y|1|A2|G|1038
*
7O7Y|1|A2|C|1079
7O7Y|1|A2|C|1080
7O7Y|1|A2|A|1081
7O7Y|1|A2|PSU|1082
7O7Y|1|A2|A|1083
7O7Y|1|A2|A|1084
7O7Y|1|A2|A|1085
7O7Y|1|A2|C|1086
7O7Y|1|A2|G|1087
7O7Y|1|A2|A|1088
7O7Y|1|A2|U|1089
7O7Y|1|A2|G|1090
*
7O7Y|1|A2|U|1161
7O7Y|1|A2|U|1162
Current chains
- Chain A2
- 18S rRNA
Nearby chains
- Chain AE
- Ribosomal protein eS26
- Chain Ak
- 40S ribosomal protein S11
- Chain Am
- uS15
- Chain An
- 40S ribosomal protein uS11
- Chain Av
- Ribosomal protein S15a
- Chain Aw
- 40S ribosomal protein S23
- Chain Az
- 60s ribosomal protein l41
- Chain B5
- Large subunit ribosomal RNA; LSU rRNA
- Chain Bp
- eL43
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