J4_7O7Y_017

3D structure

PDB id

7O7Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (high resolution)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

GUA(A2M)*(OMU)C*GUG*CGCC

Length

13 nucleotides

Bulged bases

7O7Y|1|B5|U|4423

QA status

Modified nucleotides: A2M, OMU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7O7Y_017 not in the Motif Atlas

Homologous match to J4_8GLP_013

Geometric discrepancy: 0.0525

The information below is about J4_8GLP_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_69783.1

Basepair signature

cWW-F-F-F-F-cWW-cWW-cWW

Number of instances in this motif group

2

Unit IDs

7O7Y|1|B5|G|4333
7O7Y|1|B5|U|4334
7O7Y|1|B5|A|4335
7O7Y|1|B5|A2M|4336
*
7O7Y|1|B5|OMU|4366
7O7Y|1|B5|C|4367
*
7O7Y|1|B5|G|4422
7O7Y|1|B5|U|4423
7O7Y|1|B5|G|4424
*
7O7Y|1|B5|C|4458
7O7Y|1|B5|G|4459
7O7Y|1|B5|C|4460
7O7Y|1|B5|C|4461

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BB

Ribosomal protein L3

Chain BO

Ribosomal protein uL13

Chain BV

Ribosomal protein L23