J4_7O7Z_013
3D structure
- PDB id
- 7O7Z (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (classified for pseudoknot)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.4 Å
Loop
- Sequence
- GAC(PSU)G*CAAAG*UGAUU*A(PSU)GA(A2M)C
- Length
- 21 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: PSU, A2M
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_7O7Z_013 not in the Motif Atlas
- Homologous match to J4_8C3A_006
- Geometric discrepancy: 0.2008
- The information below is about J4_8C3A_006
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
7O7Z|1|B5|G|3366
7O7Z|1|B5|A|3367
7O7Z|1|B5|C|3368
7O7Z|1|B5|PSU|3369
7O7Z|1|B5|G|3370
*
7O7Z|1|B5|C|3382
7O7Z|1|B5|A|3383
7O7Z|1|B5|A|3384
7O7Z|1|B5|A|3385
7O7Z|1|B5|G|3386
*
7O7Z|1|B5|U|3422
7O7Z|1|B5|G|3423
7O7Z|1|B5|A|3424
7O7Z|1|B5|U|3425
7O7Z|1|B5|U|3426
*
7O7Z|1|B5|A|3553
7O7Z|1|B5|PSU|3554
7O7Z|1|B5|G|3555
7O7Z|1|B5|A|3556
7O7Z|1|B5|A2M|3557
7O7Z|1|B5|C|3558
Current chains
- Chain B5
- 28S rRNA
Nearby chains
- Chain A2
- Small subunit ribosomal RNA; SSU rRNA
- Chain Az
- 60s ribosomal protein l41
- Chain BA
- Ribosomal protein uL2
- Chain Bp
- eL43
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