J4_7O80_013
3D structure
- PDB id
- 7O80 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome in complex with eRF1 and ABCE1 stalled at the STOP codon in the mutated SARS-CoV-2 slippery site
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CUG*CG*CUUAAGGUAG*UGAA(UY1)G
- Length
- 21 nucleotides
- Bulged bases
- 7O80|1|B5|UY1|3550
- QA status
- Modified nucleotides: UY1
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_7O80_013 not in the Motif Atlas
- Homologous match to J4_8C3A_007
- Geometric discrepancy: 0.087
- The information below is about J4_8C3A_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
7O80|1|B5|C|3428
7O80|1|B5|U|3429
7O80|1|B5|G|3430
*
7O80|1|B5|C|3484
7O80|1|B5|G|3485
*
7O80|1|B5|C|3503
7O80|1|B5|U|3504
7O80|1|B5|U|3505
7O80|1|B5|A|3506
7O80|1|B5|A|3507
7O80|1|B5|G|3508
7O80|1|B5|G|3509
7O80|1|B5|U|3510
7O80|1|B5|A|3511
7O80|1|B5|G|3512
*
7O80|1|B5|U|3546
7O80|1|B5|G|3547
7O80|1|B5|A|3548
7O80|1|B5|A|3549
7O80|1|B5|UY1|3550
7O80|1|B5|G|3551
Current chains
- Chain B5
- 28S rRNA
Nearby chains
- Chain A2
- Small subunit ribosomal RNA; SSU rRNA
- Chain AT
- Transfer RNA; tRNA
- Chain Az
- 60s ribosomal protein l41
- Chain BA
- Ribosomal protein uL2
Coloring options: