J4_7O81_004
3D structure
- PDB id
- 7O81 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome colliding in another ribosome stalled by the SARS-CoV-2 pseudoknot
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- UUGG*UU*AGGUCC*GA
- Length
- 14 nucleotides
- Bulged bases
- 7O81|1|AT|U|8, 7O81|1|AT|U|46, 7O81|1|AT|C|47
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_7O81_004 not in the Motif Atlas
- Homologous match to J4_4QEI_001
- Geometric discrepancy: 0.3031
- The information below is about J4_4QEI_001
- Detailed Annotation
- tRNA junction
- Broad Annotation
- No text annotation
- Motif group
- J4_35610.2
- Basepair signature
- cWW-F-cWW-cWW-cHS-F-cWW
- Number of instances in this motif group
- 6
Unit IDs
7O81|1|AT|U|7
7O81|1|AT|U|8
7O81|1|AT|G|9
7O81|1|AT|G|10
*
7O81|1|AT|U|24
7O81|1|AT|U|25
*
7O81|1|AT|A|43
7O81|1|AT|G|44
7O81|1|AT|G|45
7O81|1|AT|U|46
7O81|1|AT|C|47
7O81|1|AT|C|48
*
7O81|1|AT|G|64
7O81|1|AT|A|65
Current chains
- Chain AT
- P-site tRNA(Pro)
Nearby chains
- Chain B5
- Large subunit ribosomal RNA; LSU rRNA
- Chain Bo
- eL42
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