J4_7O81_009

3D structure

PDB id

7O81 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome colliding in another ribosome stalled by the SARS-CoV-2 pseudoknot

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

(OMC)AAAUAU*AGG*(OMC)AUGUU*AG

Length

18 nucleotides

Bulged bases

7O81|1|B5|A|2209, 7O81|1|B5|U|2212, 7O81|1|B5|U|2671

QA status

Modified nucleotides: OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7O81|1|B5|OMC|2208
7O81|1|B5|A|2209
7O81|1|B5|A|2210
7O81|1|B5|A|2211
7O81|1|B5|U|2212
7O81|1|B5|A|2213
7O81|1|B5|U|2214
*
7O81|1|B5|A|2232
7O81|1|B5|G|2233
7O81|1|B5|G|2234
*
7O81|1|B5|OMC|2667
7O81|1|B5|A|2668
7O81|1|B5|U|2669
7O81|1|B5|G|2670
7O81|1|B5|U|2671
7O81|1|B5|U|2672
*
7O81|1|B5|A|3588
7O81|1|B5|G|3589

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BP

uL22

Chain BR

60S ribosomal protein L19

Chain Bd

eL31