3D structure

PDB id
7O81 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Rabbit 80S ribosome colliding in another ribosome stalled by the SARS-CoV-2 pseudoknot
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
GUA(A2M)*(OMU)C*GUG*CGCC
Length
13 nucleotides
Bulged bases
7O81|1|B5|U|4423
QA status
Modified nucleotides: A2M, OMU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

7O81|1|B5|G|4333
7O81|1|B5|U|4334
7O81|1|B5|A|4335
7O81|1|B5|A2M|4336
*
7O81|1|B5|OMU|4366
7O81|1|B5|C|4367
*
7O81|1|B5|G|4422
7O81|1|B5|U|4423
7O81|1|B5|G|4424
*
7O81|1|B5|C|4458
7O81|1|B5|G|4459
7O81|1|B5|C|4460
7O81|1|B5|C|4461

Current chains

Chain B5
28S rRNA

Nearby chains

Chain BB
Ribosomal protein L3
Chain BO
Ribosomal protein L13a
Chain BV
Ribosomal protein L23

Coloring options:

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