J4_7O81_018

3D structure

PDB id

7O81 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome colliding in another ribosome stalled by the SARS-CoV-2 pseudoknot

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUA(A2M)*(OMU)C*GUG*CGCC

Length

13 nucleotides

Bulged bases

7O81|1|B5|U|4423

QA status

Modified nucleotides: A2M, OMU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7O81|1|B5|G|4333
7O81|1|B5|U|4334
7O81|1|B5|A|4335
7O81|1|B5|A2M|4336
*
7O81|1|B5|OMU|4366
7O81|1|B5|C|4367
*
7O81|1|B5|G|4422
7O81|1|B5|U|4423
7O81|1|B5|G|4424
*
7O81|1|B5|C|4458
7O81|1|B5|G|4459
7O81|1|B5|C|4460
7O81|1|B5|C|4461

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BB

Ribosomal protein L3

Chain BO

Ribosomal protein L13a

Chain BV

Ribosomal protein L23