J4_7O81_018
3D structure
- PDB id
- 7O81 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome colliding in another ribosome stalled by the SARS-CoV-2 pseudoknot
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GUA(A2M)*(OMU)C*GUG*CGCC
- Length
- 13 nucleotides
- Bulged bases
- 7O81|1|B5|U|4423
- QA status
- Modified nucleotides: A2M, OMU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
7O81|1|B5|G|4333
7O81|1|B5|U|4334
7O81|1|B5|A|4335
7O81|1|B5|A2M|4336
*
7O81|1|B5|OMU|4366
7O81|1|B5|C|4367
*
7O81|1|B5|G|4422
7O81|1|B5|U|4423
7O81|1|B5|G|4424
*
7O81|1|B5|C|4458
7O81|1|B5|G|4459
7O81|1|B5|C|4460
7O81|1|B5|C|4461
Current chains
- Chain B5
- 28S rRNA
Nearby chains
- Chain BB
- Ribosomal protein L3
- Chain BO
- Ribosomal protein L13a
- Chain BV
- Ribosomal protein L23
Coloring options: