J4_7ODE_002
3D structure
- PDB id
- 7ODE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 50S ribosome LiCl core particle
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.84 Å
Loop
- Sequence
- CGAUAAA*UC*GCUU*AG
- Length
- 15 nucleotides
- Bulged bases
- 7ODE|1|I|G|1271, 7ODE|1|I|A|1272, 7ODE|1|I|U|1273, 7ODE|1|I|A|1275, 7ODE|1|I|U|1647
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_7ODE_002 not in the Motif Atlas
- Homologous match to J4_5J7L_021
- Geometric discrepancy: 0.1237
- The information below is about J4_5J7L_021
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_64571.5
- Basepair signature
- cWW-F-cWW-tSS-cWW-F-cWW
- Number of instances in this motif group
- 4
Unit IDs
7ODE|1|I|C|1270
7ODE|1|I|G|1271
7ODE|1|I|A|1272
7ODE|1|I|U|1273
7ODE|1|I|A|1274
7ODE|1|I|A|1275
7ODE|1|I|A|1276
*
7ODE|1|I|U|1294
7ODE|1|I|C|1295
*
7ODE|1|I|G|1645
7ODE|1|I|C|1646
7ODE|1|I|U|1647
7ODE|1|I|U|1648
*
7ODE|1|I|A|2009
7ODE|1|I|G|2010
Current chains
- Chain I
- 23S rRNA
Nearby chains
- Chain V
- 50S ribosomal protein L17
- Chain a
- 50S ribosomal protein L22
- Chain i
- 50S ribosomal protein L32
Coloring options: