3D structure

PDB id
7OH3 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Nog1-TAP associated immature ribosomal particle population B from S. cerevisiae
Experimental method
ELECTRON MICROSCOPY
Resolution
3.4 Å

Loop

Sequence
UC*GAGUCG*CUAAGUG*UAAA
Length
19 nucleotides
Bulged bases
7OH3|1|1|U|298
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_7OH3_001 not in the Motif Atlas
Homologous match to J4_8P9A_012
Geometric discrepancy: 0.1451
The information below is about J4_8P9A_012
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_45801.6
Basepair signature
cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW
Number of instances in this motif group
7

Unit IDs

7OH3|1|1|U|112
7OH3|1|1|C|113
*
7OH3|1|1|G|267
7OH3|1|1|A|268
7OH3|1|1|G|269
7OH3|1|1|U|270
7OH3|1|1|C|271
7OH3|1|1|G|272
*
7OH3|1|1|C|293
7OH3|1|1|U|294
7OH3|1|1|A|295
7OH3|1|1|A|296
7OH3|1|1|G|297
7OH3|1|1|U|298
7OH3|1|1|G|299
*
7OH3|1|1|U|316
7OH3|1|1|A|317
7OH3|1|1|A|318
7OH3|1|1|A|319

Current chains

Chain 1
25S rRNA

Nearby chains

Chain L
60S ribosomal protein L13-A
Chain N
60S ribosomal protein L15-A
Chain h
60S ribosomal protein L35-A
Chain i
60S ribosomal protein L36-A

Coloring options:


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