3D structure

PDB id
7OH3 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Nog1-TAP associated immature ribosomal particle population B from S. cerevisiae
Experimental method
ELECTRON MICROSCOPY
Resolution
3.4 Å

Loop

Sequence
CAAAUAU*AG*UGAU*AG
Length
15 nucleotides
Bulged bases
7OH3|1|1|A|1452, 7OH3|1|1|U|1455
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_7OH3_003 not in the Motif Atlas
Homologous match to J4_8C3A_003
Geometric discrepancy: 0.1432
The information below is about J4_8C3A_003
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

7OH3|1|1|C|1451
7OH3|1|1|A|1452
7OH3|1|1|A|1453
7OH3|1|1|A|1454
7OH3|1|1|U|1455
7OH3|1|1|A|1456
7OH3|1|1|U|1457
*
7OH3|1|1|A|1475
7OH3|1|1|G|1476
*
7OH3|1|1|U|1877
7OH3|1|1|G|1878
7OH3|1|1|A|1879
7OH3|1|1|U|1880
*
7OH3|1|1|A|2352
7OH3|1|1|G|2353

Current chains

Chain 1
25S rRNA

Nearby chains

Chain P
60S ribosomal protein L17-A
Chain R
60S ribosomal protein L19-A
Chain d
60S ribosomal protein L31-A

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.3625 s
Application loaded.