J4_7OHV_003
3D structure
- PDB id
- 7OHV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Nog1-TAP associated immature ribosomal particles from S. cerevisiae after rpL2 expression shut down, population C
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- GGUUC*GGUUAG*CC*GGUCGUAC
- Length
- 21 nucleotides
- Bulged bases
- 7OHV|1|1|U|1523
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_7OHV_003 not in the Motif Atlas
- Homologous match to J4_8C3A_004
- Geometric discrepancy: 0.1476
- The information below is about J4_8C3A_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
7OHV|1|1|G|1492
7OHV|1|1|G|1493
7OHV|1|1|U|1494
7OHV|1|1|U|1495
7OHV|1|1|C|1496
*
7OHV|1|1|G|1520
7OHV|1|1|G|1521
7OHV|1|1|U|1522
7OHV|1|1|U|1523
7OHV|1|1|A|1524
7OHV|1|1|G|1525
*
7OHV|1|1|C|1614
7OHV|1|1|C|1615
*
7OHV|1|1|G|1829
7OHV|1|1|G|1830
7OHV|1|1|U|1831
7OHV|1|1|C|1832
7OHV|1|1|G|1833
7OHV|1|1|U|1834
7OHV|1|1|A|1835
7OHV|1|1|C|1836
Current chains
- Chain 1
- 25S rRNA
Nearby chains
- Chain 2
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain R
- 60S ribosomal protein L19-A
- Chain X
- 60S ribosomal protein L25
- Chain j
- 60S ribosomal protein L37-A
- Chain k
- 60S ribosomal protein L38
- Chain n
- Pescadillo homolog
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