J4_7OI0_001

3D structure

PDB id

7OI0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli delta rbfA pre-30S ribosomal subunit class D

Experimental method

ELECTRON MICROSCOPY

Resolution

2.76 Å

Loop

Sequence

GAGUAAUG*UG*CUAG*CC

Length

16 nucleotides

Bulged bases

7OI0|1|A|U|121

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7OI0_001 not in the Motif Atlas

Homologous match to J4_6CZR_027

Geometric discrepancy: 0.359

The information below is about J4_6CZR_027

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_35578.2

Basepair signature

cWW-F-cWW-F-F-F-tHW-F-cWW-cWW

Number of instances in this motif group

3

Unit IDs

7OI0|1|A|G|115
7OI0|1|A|A|116
7OI0|1|A|G|117
7OI0|1|A|U|118
7OI0|1|A|A|119
7OI0|1|A|A|120
7OI0|1|A|U|121
7OI0|1|A|G|122
*
7OI0|1|A|U|239
7OI0|1|A|G|240
*
7OI0|1|A|C|286
7OI0|1|A|U|287
7OI0|1|A|A|288
7OI0|1|A|G|289
*
7OI0|1|A|C|311
7OI0|1|A|C|312

Current chains

Chain A

16S rRNA

Nearby chains

Chain P

30S ribosomal protein S16

Chain Q

30S ribosomal protein S17