J4_7OIF_013

3D structure

PDB id

7OIF (explore in PDB, NAKB, or RNA 3D Hub)

Description

CspA-27 cotranslational folding intermediate 2

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GAG*CAUAACG*CCAAAG*UGC

Length

19 nucleotides

Bulged bases

7OIF|1|2|C|183, 7OIF|1|2|A|197

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7OIF_013 not in the Motif Atlas

Homologous match to J4_5J7L_002

Geometric discrepancy: 0.1657

The information below is about J4_5J7L_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_01665.1

Basepair signature

cWW-tWH-F-tWH-cWW-tSS-F-tHW-tSS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

7OIF|1|2|G|142
7OIF|1|2|A|143
7OIF|1|2|G|144
*
7OIF|1|2|C|178
7OIF|1|2|A|179
7OIF|1|2|U|180
7OIF|1|2|A|181
7OIF|1|2|A|182
7OIF|1|2|C|183
7OIF|1|2|G|184
*
7OIF|1|2|C|193
7OIF|1|2|C|194
7OIF|1|2|A|195
7OIF|1|2|A|196
7OIF|1|2|A|197
7OIF|1|2|G|198
*
7OIF|1|2|U|219
7OIF|1|2|G|220
7OIF|1|2|C|221

Current chains

Chain 2

16S rRNA

Nearby chains

Chain x

30S ribosomal protein S20