J4_7OIG_013

3D structure

PDB id

7OIG (explore in PDB, NAKB, or RNA 3D Hub)

Description

CspA-27 cotranslational folding intermediate 3

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GAG*CAUAACG*CCAAAG*UGC

Length

19 nucleotides

Bulged bases

7OIG|1|2|C|183, 7OIG|1|2|A|197

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7OIG_013 not in the Motif Atlas

Homologous match to J4_5J7L_002

Geometric discrepancy: 0.1646

The information below is about J4_5J7L_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_01665.1

Basepair signature

cWW-tWH-F-tWH-cWW-tSS-F-tHW-tSS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

7OIG|1|2|G|142
7OIG|1|2|A|143
7OIG|1|2|G|144
*
7OIG|1|2|C|178
7OIG|1|2|A|179
7OIG|1|2|U|180
7OIG|1|2|A|181
7OIG|1|2|A|182
7OIG|1|2|C|183
7OIG|1|2|G|184
*
7OIG|1|2|C|193
7OIG|1|2|C|194
7OIG|1|2|A|195
7OIG|1|2|A|196
7OIG|1|2|A|197
7OIG|1|2|G|198
*
7OIG|1|2|U|219
7OIG|1|2|G|220
7OIG|1|2|C|221

Current chains

Chain 2

16S rRNA

Nearby chains

Chain x

30S ribosomal protein S20