J4_7OII_001

3D structure

PDB id

7OII (explore in PDB, NAKB, or RNA 3D Hub)

Description

CspA-70 cotranslational folding intermediate 2

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

7OII|1|1|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7OII_001 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.1276

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

7OII|1|1|C|268
7OII|1|1|C|269
*
7OII|1|1|G|370
7OII|1|1|A|371
7OII|1|1|G|372
7OII|1|1|U|373
7OII|1|1|A|374
7OII|1|1|G|375
*
7OII|1|1|U|399
7OII|1|1|G|400
7OII|1|1|A|401
7OII|1|1|A|402
7OII|1|1|U|403
7OII|1|1|A|404
7OII|1|1|U|405
7OII|1|1|G|406
*
7OII|1|1|C|421
7OII|1|1|A|422
7OII|1|1|A|423
7OII|1|1|G|424

Current chains

Chain 1

23S rRNA

Nearby chains

Chain H

50S ribosomal protein L9

Chain W

50S ribosomal protein L28