J4_7OII_012

3D structure

PDB id

7OII (explore in PDB, NAKB, or RNA 3D Hub)

Description

CspA-70 cotranslational folding intermediate 2

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GAGUAAUG*UG*CUAG*CC

Length

16 nucleotides

Bulged bases

7OII|1|2|U|121

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7OII_012 not in the Motif Atlas

Homologous match to J4_5J7L_001

Geometric discrepancy: 0.1844

The information below is about J4_5J7L_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_35578.3

Basepair signature

cWW-F-cWW-F-F-F-tHW-F-cWW-cWW

Number of instances in this motif group

2

Unit IDs

7OII|1|2|G|115
7OII|1|2|A|116
7OII|1|2|G|117
7OII|1|2|U|118
7OII|1|2|A|119
7OII|1|2|A|120
7OII|1|2|U|121
7OII|1|2|G|122
*
7OII|1|2|U|239
7OII|1|2|G|240
*
7OII|1|2|C|286
7OII|1|2|U|287
7OII|1|2|A|288
7OII|1|2|G|289
*
7OII|1|2|C|311
7OII|1|2|C|312

Current chains

Chain 2

16S rRNA

Nearby chains

Chain t

30S ribosomal protein S16

Chain u

30S ribosomal protein S17