J4_7OIZ_001

3D structure

PDB id

7OIZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 70S ribosome stalled with TnaC peptide

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GAGUAAUG*UG*CUAG*CC

Length

16 nucleotides

Bulged bases

7OIZ|1|A|U|121

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7OIZ_001 not in the Motif Atlas

Homologous match to J4_5J7L_001

Geometric discrepancy: 0.1239

The information below is about J4_5J7L_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_35578.3

Basepair signature

cWW-F-cWW-F-F-F-tHW-F-cWW-cWW

Number of instances in this motif group

2

Unit IDs

7OIZ|1|A|G|115
7OIZ|1|A|A|116
7OIZ|1|A|G|117
7OIZ|1|A|U|118
7OIZ|1|A|A|119
7OIZ|1|A|A|120
7OIZ|1|A|U|121
7OIZ|1|A|G|122
*
7OIZ|1|A|U|239
7OIZ|1|A|G|240
*
7OIZ|1|A|C|286
7OIZ|1|A|U|287
7OIZ|1|A|A|288
7OIZ|1|A|G|289
*
7OIZ|1|A|C|311
7OIZ|1|A|C|312

Current chains

Chain A

16S rRNA

Nearby chains

Chain P

30S ribosomal protein S16

Chain Q

30S ribosomal protein S17