3D structure

PDB id
7OIZ (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of 70S ribosome stalled with TnaC peptide
Experimental method
ELECTRON MICROSCOPY
Resolution
2.9 Å

Loop

Sequence
GAG*CAUAACG*CCAAAG*UGC
Length
19 nucleotides
Bulged bases
7OIZ|1|A|C|183, 7OIZ|1|A|A|197
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_7OIZ_002 not in the Motif Atlas
Homologous match to J4_5J7L_002
Geometric discrepancy: 0.1065
The information below is about J4_5J7L_002
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_01665.1
Basepair signature
cWW-tWH-F-tWH-cWW-tSS-F-tHW-tSS-cWW-cWW
Number of instances in this motif group
1

Unit IDs

7OIZ|1|A|G|142
7OIZ|1|A|A|143
7OIZ|1|A|G|144
*
7OIZ|1|A|C|178
7OIZ|1|A|A|179
7OIZ|1|A|U|180
7OIZ|1|A|A|181
7OIZ|1|A|A|182
7OIZ|1|A|C|183
7OIZ|1|A|G|184
*
7OIZ|1|A|C|193
7OIZ|1|A|C|194
7OIZ|1|A|A|195
7OIZ|1|A|A|196
7OIZ|1|A|A|197
7OIZ|1|A|G|198
*
7OIZ|1|A|U|219
7OIZ|1|A|G|220
7OIZ|1|A|C|221

Current chains

Chain A
16S rRNA

Nearby chains

Chain T
30S ribosomal protein S20

Coloring options:


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