J4_7OIZ_005

3D structure

PDB id

7OIZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 70S ribosome stalled with TnaC peptide

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

7OIZ|1|a|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7OIZ_005 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.1302

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

7OIZ|1|a|C|268
7OIZ|1|a|C|269
*
7OIZ|1|a|G|370
7OIZ|1|a|A|371
7OIZ|1|a|G|372
7OIZ|1|a|U|373
7OIZ|1|a|A|374
7OIZ|1|a|G|375
*
7OIZ|1|a|U|399
7OIZ|1|a|G|400
7OIZ|1|a|A|401
7OIZ|1|a|A|402
7OIZ|1|a|U|403
7OIZ|1|a|A|404
7OIZ|1|a|U|405
7OIZ|1|a|G|406
*
7OIZ|1|a|C|421
7OIZ|1|a|A|422
7OIZ|1|a|A|423
7OIZ|1|a|G|424

Current chains

Chain a

23S rRNA

Nearby chains

Chain h

50S ribosomal protein L9

Chain w

50S ribosomal protein L28