J4_7OJ0_002

3D structure

PDB id

7OJ0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 70S ribosome stalled with TnaC peptide and RF2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GAG*CAUAACG*CCAAAG*UGC

Length

19 nucleotides

Bulged bases

7OJ0|1|A|C|183, 7OJ0|1|A|A|197

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7OJ0_002 not in the Motif Atlas

Homologous match to J4_5J7L_002

Geometric discrepancy: 0.1643

The information below is about J4_5J7L_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_01665.1

Basepair signature

cWW-tWH-F-tWH-cWW-tSS-F-tHW-tSS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

7OJ0|1|A|G|142
7OJ0|1|A|A|143
7OJ0|1|A|G|144
*
7OJ0|1|A|C|178
7OJ0|1|A|A|179
7OJ0|1|A|U|180
7OJ0|1|A|A|181
7OJ0|1|A|A|182
7OJ0|1|A|C|183
7OJ0|1|A|G|184
*
7OJ0|1|A|C|193
7OJ0|1|A|C|194
7OJ0|1|A|A|195
7OJ0|1|A|A|196
7OJ0|1|A|A|197
7OJ0|1|A|G|198
*
7OJ0|1|A|U|219
7OJ0|1|A|G|220
7OJ0|1|A|C|221

Current chains

Chain A

16S rRNA

Nearby chains

Chain T

30S ribosomal protein S20