J4_7OJ0_005

3D structure

PDB id

7OJ0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 70S ribosome stalled with TnaC peptide and RF2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

7OJ0|1|a|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7OJ0_005 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.1398

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

7OJ0|1|a|C|268
7OJ0|1|a|C|269
*
7OJ0|1|a|G|370
7OJ0|1|a|A|371
7OJ0|1|a|G|372
7OJ0|1|a|U|373
7OJ0|1|a|A|374
7OJ0|1|a|G|375
*
7OJ0|1|a|U|399
7OJ0|1|a|G|400
7OJ0|1|a|A|401
7OJ0|1|a|A|402
7OJ0|1|a|U|403
7OJ0|1|a|A|404
7OJ0|1|a|U|405
7OJ0|1|a|G|406
*
7OJ0|1|a|C|421
7OJ0|1|a|A|422
7OJ0|1|a|A|423
7OJ0|1|a|G|424

Current chains

Chain a

23S rRNA

Nearby chains

Chain h

50S ribosomal protein L9

Chain w

50S ribosomal protein L28