J4_7OJ0_008

3D structure

PDB id

7OJ0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 70S ribosome stalled with TnaC peptide and RF2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CGAUAAA*UC*GCUU*AG

Length

15 nucleotides

Bulged bases

7OJ0|1|a|G|1271, 7OJ0|1|a|A|1272, 7OJ0|1|a|U|1273, 7OJ0|1|a|A|1275, 7OJ0|1|a|U|1647

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7OJ0_008 not in the Motif Atlas

Homologous match to J4_5J7L_021

Geometric discrepancy: 0.093

The information below is about J4_5J7L_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_64571.5

Basepair signature

cWW-F-cWW-tSS-cWW-F-cWW

Number of instances in this motif group

4

Unit IDs

7OJ0|1|a|C|1270
7OJ0|1|a|G|1271
7OJ0|1|a|A|1272
7OJ0|1|a|U|1273
7OJ0|1|a|A|1274
7OJ0|1|a|A|1275
7OJ0|1|a|A|1276
*
7OJ0|1|a|U|1294
7OJ0|1|a|C|1295
*
7OJ0|1|a|G|1645
7OJ0|1|a|C|1646
7OJ0|1|a|U|1647
7OJ0|1|a|U|1648
*
7OJ0|1|a|A|2009
7OJ0|1|a|G|2010

Current chains

Chain a

23S rRNA

Nearby chains

Chain m

50S ribosomal protein L17

Chain r

50S ribosomal protein L22

Chain z

50S ribosomal protein L32