J4_7OLC_017
3D structure
- PDB id
- 7OLC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Thermophilic eukaryotic 80S ribosome at idle POST state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- AAG*CGAAAG*CCAUAAACUAUG*CU
- Length
- 23 nucleotides
- Bulged bases
- 7OLC|1|2|A|620, 7OLC|1|2|A|1024, 7OLC|1|2|C|1026, 7OLC|1|2|U|1027, 7OLC|1|2|A|1028, 7OLC|1|2|U|1029
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_7OLC_017 not in the Motif Atlas
- Homologous match to J4_8P9A_022
- Geometric discrepancy: 0.1179
- The information below is about J4_8P9A_022
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_14595.1
- Basepair signature
- cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F
- Number of instances in this motif group
- 5
Unit IDs
7OLC|1|2|A|619
7OLC|1|2|A|620
7OLC|1|2|G|621
*
7OLC|1|2|C|973
7OLC|1|2|G|974
7OLC|1|2|A|975
7OLC|1|2|A|976
7OLC|1|2|A|977
7OLC|1|2|G|978
*
7OLC|1|2|C|1019
7OLC|1|2|C|1020
7OLC|1|2|A|1021
7OLC|1|2|U|1022
7OLC|1|2|A|1023
7OLC|1|2|A|1024
7OLC|1|2|A|1025
7OLC|1|2|C|1026
7OLC|1|2|U|1027
7OLC|1|2|A|1028
7OLC|1|2|U|1029
7OLC|1|2|G|1030
*
7OLC|1|2|C|1100
7OLC|1|2|U|1101
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain Ln
- 60S ribosomal protein L41-A
- Chain Lp
- 60S ribosomal protein L43-like protein
- Chain SL
- 40S ribosomal protein S11-like protein
- Chain SN
- 40S ribosomal protein S13-like protein
- Chain SO
- 40S ribosomal protein S14-like protein
- Chain SW
- 40S ribosomal protein S22-like protein
- Chain SX
- 40S ribosomal protein s23-like protein
- Chain Sa
- 40S ribosomal protein S26
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