J4_7OLD_007
3D structure
- PDB id
- 7OLD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Thermophilic eukaryotic 80S ribosome at pe/E (TI)-POST state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- GACUG*CAUAG*UGAUU*AUUAAC
- Length
- 21 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_7OLD_007 not in the Motif Atlas
- Homologous match to J4_8P9A_017
- Geometric discrepancy: 0.1145
- The information below is about J4_8P9A_017
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_78485.1
- Basepair signature
- cWW-tSW-F-F-tHS-F-cWW-F-cWW-F-F-tHS-F-cWW
- Number of instances in this motif group
- 6
Unit IDs
7OLD|1|1|G|2093
7OLD|1|1|A|2094
7OLD|1|1|C|2095
7OLD|1|1|U|2096
7OLD|1|1|G|2097
*
7OLD|1|1|C|2109
7OLD|1|1|A|2110
7OLD|1|1|U|2111
7OLD|1|1|A|2112
7OLD|1|1|G|2113
*
7OLD|1|1|U|2149
7OLD|1|1|G|2150
7OLD|1|1|A|2151
7OLD|1|1|U|2152
7OLD|1|1|U|2153
*
7OLD|1|1|A|2280
7OLD|1|1|U|2281
7OLD|1|1|U|2282
7OLD|1|1|A|2283
7OLD|1|1|A|2284
7OLD|1|1|C|2285
Current chains
- Chain 1
- 26S rRNA
Nearby chains
- Chain 2
- Small subunit ribosomal RNA; SSU rRNA
- Chain LA
- 60S ribosomal protein L2-like protein
- Chain Ln
- 60S ribosomal protein L41-A
- Chain Lp
- 60S ribosomal protein L43-like protein
Coloring options: