J4_7OLD_014
3D structure
- PDB id
- 7OLD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Thermophilic eukaryotic 80S ribosome at pe/E (TI)-POST state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- CAAAUAC*GG*UGAU*AG
- Length
- 15 nucleotides
- Bulged bases
- 7OLD|1|1|A|1435, 7OLD|1|1|U|1438
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_7OLD_014 not in the Motif Atlas
- Homologous match to J4_8P9A_014
- Geometric discrepancy: 0.1754
- The information below is about J4_8P9A_014
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_34212.1
- Basepair signature
- cWW-F-cWW-F-F-F-cWW-F-cWW
- Number of instances in this motif group
- 3
Unit IDs
7OLD|1|1|C|1434
7OLD|1|1|A|1435
7OLD|1|1|A|1436
7OLD|1|1|A|1437
7OLD|1|1|U|1438
7OLD|1|1|A|1439
7OLD|1|1|C|1440
*
7OLD|1|1|G|1458
7OLD|1|1|G|1459
*
7OLD|1|1|U|1857
7OLD|1|1|G|1858
7OLD|1|1|A|1859
7OLD|1|1|U|1860
*
7OLD|1|1|A|2315
7OLD|1|1|G|2316
Current chains
- Chain 1
- 26S rRNA
Nearby chains
- Chain LP
- 60S ribosomal protein l17-like protein
- Chain LR
- Ribosomal protein L19
- Chain Ld
- Putative 60S ribosomal protein
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