J4_7OOD_003

3D structure

PDB id

7OOD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mycoplasma pneumoniae 50S subunit of ribosomes in chloramphenicol-treated cells

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CGCUU*AA*UAGC*GG

Length

13 nucleotides

Bulged bases

7OOD|1|3|G|1301, 7OOD|1|3|U|1303, 7OOD|1|3|G|1681

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7OOD_003 not in the Motif Atlas

Homologous match to J4_4WF9_004

Geometric discrepancy: 0.4464

The information below is about J4_4WF9_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_64571.6

Basepair signature

cWW-F-cWW-tSS-cWW-F-cWW

Number of instances in this motif group

4

Unit IDs

7OOD|1|3|C|1300
7OOD|1|3|G|1301
7OOD|1|3|C|1302
7OOD|1|3|U|1303
7OOD|1|3|U|1304
*
7OOD|1|3|A|1322
7OOD|1|3|A|1323
*
7OOD|1|3|U|1679
7OOD|1|3|A|1680
7OOD|1|3|G|1681
7OOD|1|3|C|1682
*
7OOD|1|3|G|2016
7OOD|1|3|G|2017

Current chains

Chain 3

23S ribosomal RNA

Nearby chains

Chain m

50S ribosomal protein L17

Chain r

50S ribosomal protein L22

Chain y

50S ribosomal protein L32