J4_7OOD_008

3D structure

PDB id

7OOD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mycoplasma pneumoniae 50S subunit of ribosomes in chloramphenicol-treated cells

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CUG*CG*CCUAAGGUAG*UGAAUG

Length

21 nucleotides

Bulged bases

7OOD|1|3|U|1978

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7OOD_008 not in the Motif Atlas

Homologous match to J4_9DFE_008

Geometric discrepancy: 0.1129

The information below is about J4_9DFE_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_42306.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

5

Unit IDs

7OOD|1|3|C|1840
7OOD|1|3|U|1841
7OOD|1|3|G|1842
*
7OOD|1|3|C|1912
7OOD|1|3|G|1913
*
7OOD|1|3|C|1931
7OOD|1|3|C|1932
7OOD|1|3|U|1933
7OOD|1|3|A|1934
7OOD|1|3|A|1935
7OOD|1|3|G|1936
7OOD|1|3|G|1937
7OOD|1|3|U|1938
7OOD|1|3|A|1939
7OOD|1|3|G|1940
*
7OOD|1|3|U|1974
7OOD|1|3|G|1975
7OOD|1|3|A|1976
7OOD|1|3|A|1977
7OOD|1|3|U|1978
7OOD|1|3|G|1979

Current chains

Chain 3

23S ribosomal RNA

Nearby chains

Chain a

50S ribosomal protein L2