J4_7OPE_001
3D structure
- PDB id
- 7OPE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- RqcH DR variant bound to 50S-peptidyl-tRNA-RqcP RQC complex (rigid body refinement)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- UUAG*CGC*GAGGUCA*UA
- Length
- 16 nucleotides
- Bulged bases
- 7OPE|1|2|U|8, 7OPE|1|2|U|47, 7OPE|1|2|C|48
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_7OPE_001 not in the Motif Atlas
- Homologous match to J4_6JXM_001
- Geometric discrepancy: 0.1726
- The information below is about J4_6JXM_001
- Detailed Annotation
- tRNA junction
- Broad Annotation
- No text annotation
- Motif group
- J4_95067.1
- Basepair signature
- cWW-F-cWW-cWW-cHS-F-cWW-cWW
- Number of instances in this motif group
- 48
Unit IDs
7OPE|1|2|U|7
7OPE|1|2|U|8
7OPE|1|2|A|9
7OPE|1|2|G|10
*
7OPE|1|2|C|25
7OPE|1|2|G|26
7OPE|1|2|C|27
*
7OPE|1|2|G|43
7OPE|1|2|A|44
7OPE|1|2|G|45
7OPE|1|2|G|46
7OPE|1|2|U|47
7OPE|1|2|C|48
7OPE|1|2|A|49
*
7OPE|1|2|U|65
7OPE|1|2|A|66
Current chains
- Chain 2
- tRNA-Ala-UGC
Nearby chains
- Chain 0
- Rqc2 homolog RqcH
- Chain 1
- Uncharacterized protein YabO
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain Q
- 50S ribosomal protein L16
- Chain a
- 50S ribosomal protein L27
Coloring options: