J4_7OPE_012
3D structure
- PDB id
- 7OPE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- RqcH DR variant bound to 50S-peptidyl-tRNA-RqcP RQC complex (rigid body refinement)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- GAGC*GAC*GGACG*CCC
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_7OPE_012 not in the Motif Atlas
- Homologous match to J4_9DFE_010
- Geometric discrepancy: 0.1856
- The information below is about J4_9DFE_010
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_77044.5
- Basepair signature
- cWW-F-tHS-F-cWW-cWW-cWW-F-cWW
- Number of instances in this motif group
- 3
Unit IDs
7OPE|1|A|G|2672
7OPE|1|A|A|2673
7OPE|1|A|G|2674
7OPE|1|A|C|2675
*
7OPE|1|A|G|2703
7OPE|1|A|A|2704
7OPE|1|A|C|2705
*
7OPE|1|A|G|2760
7OPE|1|A|G|2761
7OPE|1|A|A|2762
7OPE|1|A|C|2763
7OPE|1|A|G|2764
*
7OPE|1|A|C|2798
7OPE|1|A|C|2799
7OPE|1|A|C|2800
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain F
- 50S ribosomal protein L3
- Chain N
- 50S ribosomal protein L13
- Chain O
- 50S ribosomal protein L14
Coloring options: