J4_7OSA_004
3D structure
- PDB id
- 7OSA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Pre-translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- CAAAUAU*AG*UGAU*AG
- Length
- 15 nucleotides
- Bulged bases
- 7OSA|1|25S|A|1452, 7OSA|1|25S|U|1455
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_7OSA_004 not in the Motif Atlas
- Homologous match to J4_8P9A_014
- Geometric discrepancy: 0.076
- The information below is about J4_8P9A_014
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_87855.1
- Basepair signature
- cWW-F-cWW-F-F-F-cWW-F-cWW
- Number of instances in this motif group
- 2
Unit IDs
7OSA|1|25S|C|1451
7OSA|1|25S|A|1452
7OSA|1|25S|A|1453
7OSA|1|25S|A|1454
7OSA|1|25S|U|1455
7OSA|1|25S|A|1456
7OSA|1|25S|U|1457
*
7OSA|1|25S|A|1475
7OSA|1|25S|G|1476
*
7OSA|1|25S|U|1877
7OSA|1|25S|G|1878
7OSA|1|25S|A|1879
7OSA|1|25S|U|1880
*
7OSA|1|25S|A|2352
7OSA|1|25S|G|2353
Current chains
- Chain 25S
- 25S rRNA
Nearby chains
- Chain eL19
- 60S ribosomal protein L19-A
- Chain eL31
- BJ4_G0008090.mRNA.1.CDS.1
- Chain uL22
- BJ4_G0005750.mRNA.1.CDS.1
Coloring options: