J4_7OSA_011
3D structure
- PDB id
- 7OSA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Pre-translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- GUGG*CGU*AAGGUCG*CC
- Length
- 16 nucleotides
- Bulged bases
- 7OSA|1|PSIT|U|8, 7OSA|1|PSIT|U|48, 7OSA|1|PSIT|C|49
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_7OSA_011 not in the Motif Atlas
- Homologous match to J4_7MRL_001
- Geometric discrepancy: 0.2403
- The information below is about J4_7MRL_001
- Detailed Annotation
- tRNA junction
- Broad Annotation
- No text annotation
- Motif group
- J4_70449.29
- Basepair signature
- cWW-F-cWW-cWW-cHS-F-cWW-cWW
- Number of instances in this motif group
- 54
Unit IDs
7OSA|1|PSIT|G|7
7OSA|1|PSIT|U|8
7OSA|1|PSIT|G|9
7OSA|1|PSIT|G|10
*
7OSA|1|PSIT|C|26
7OSA|1|PSIT|G|27
7OSA|1|PSIT|U|28
*
7OSA|1|PSIT|A|44
7OSA|1|PSIT|A|45
7OSA|1|PSIT|G|46
7OSA|1|PSIT|G|47
7OSA|1|PSIT|U|48
7OSA|1|PSIT|C|49
7OSA|1|PSIT|G|50
*
7OSA|1|PSIT|C|66
7OSA|1|PSIT|C|67
Current chains
- Chain PSIT
- Psite tRNA-Phe
Nearby chains
- Chain 18S
- Small subunit ribosomal RNA; SSU rRNA
- Chain 25S
- Large subunit ribosomal RNA; LSU rRNA
- Chain eL42
- BJ4_G0001880.mRNA.1.CDS.1
- Chain uS13
- 40S ribosomal protein S18-B
Coloring options: